Publications

1. Stecher B, Berry D, and Loy A (2013) Colonization resistance and microbial ecophysiology: Using gnotobiotic mouse models and single-cell technology to explore the intestinal jungle. FEMS Microbiol Rev. 37: 793-829.
2. Daniel H, Moghaddas Gholami A, Berry D, Desmarchelier C, Hahne H, Loh G, Mondot S, Lepage P, Rothballer M, Walker A, Böhm C, Wenning M, Wagner M, Blaut M, Schmitt-Kopplin P, Kuster B, Haller D, and Clavel T (2013) High fat diet alters gut microbiota physiology in mice. ISME J. 8(2): 295-308.
3. Berry D, Widder S (2014) Deciphering microbial interactions and detecting keystone species with co-occurrence networks. Front Microbiol. 5:219. doi: 10.3389/fmicb.2014.00219.
4. Berry D, Mader E, Lee TK, Woebken D, Wang Y, Zhu D, Palitinszky M, Schintlmeister A, Schmid M, Hanson BT, Shterzer N, Mizrahi I, Rauch I, Decker T, Bocklitz T, Popp J, Gibson CM, Fowler PW, Huang WE, Wagner M (2015) Tracking heavy water (D₂O) incorporation for identifying and sorting active microbial cells. Proc Natl Acad Sci USA. 112(2):E194-203.